Welcome to Cellist’s documentation!

PyPI Docs

Cell identification in high-resolution Spatial Transcriptomics (Cellist), computational method to perform cell segmentation on high-resolution spatial transcriptomics (ST) data, including sequncing-based (e.g. Stereo-seq and Seq-Scope) and imaging-based (e.g. seqFISH+ and STARmap) technologies.

_images/Cellist_workflow.png

1.1.1 2025-09-11

Feature

  • Fix a typo in the Watershed segmentation

  • Update package dependencies